rs33401149 SNP Detail

Summary

• ID
  rs33401149
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100822714 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAAATGTT TTCTTTATGT
  GAAGAATGTC ATTGGAGTTT TTATGAGTGT TACATTGACT ATATTGCTTT TGGTAAGGCA
  GCCATCTTAA CACTATCGAT TCTGCCAACC TGTGAGTATG GGAGGTCTCT CAATTAGTCT
  TTGCCCATAT TGACATGCCA TCCTGACAAG GAGCAAGCCA TGAAACTAAC CAGGGCAAAA
  R
  TGGACCACAC CAAAGGTCCA ATTTAAAACA ACATTTTCAC CGGGCATGGT GGCACACGTC
  TTTAATCCCA GCACTTGGGA GGAAGAGGCA GATGGATTTC TGAGTTCGAG GCCAGCCTGG
  TCTACAAAGT GAGTTCCAGG ACAGCCAAGG ATACACAGAG AAACCCTGTC TCGAAAAACA
  AAAACAAAAA CAAAAACAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46808921	NES10731638	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G	A	G	G	G	G		G	G	A	G		G
ss135542848	ENSMUSSNP5725006	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
ss320850229	CHEV_3_100719321	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33401149					SNP	G	G	A	A	A	G	A	G	G	G	G	A	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46808921	NES10731638	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100822714 () rs orientation: forward

Symbol	Name	Function Class
Gm40108	predicted gene, 40108	178 bp downstream
Rr581925	regulatory region 581925	1445 bp proximal
Rr581926	regulatory region 581926	1539 bp proximal