rs33401458 SNP Detail

Summary

• ID
  rs33401458
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:116659297 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAGCTTCA GGATTGTAAT
  TACCAGTCCA GAGGATGAGA TCTGAGTCAT GTCTCTGGCC CTGGGCAGAG ACAGAACATT
  CTGAACTTCC CAGAAGGTCA TAAGATTATG ATATGGCCGG AGGCTTTCTG GTAAAGAACA
  AAGACATTCT ACTTCACCAG GCCTCAAGAG TTAGTCTAAA GTGGGCCTGC CAATCACCGG
  R
  TAGGAAAATT CCCGGCAGGA AAGCTGTTTT AGAGACCTTA AGAAATCGTG TGACATGCCT
  CATGCATAGG CTGCACAGTG ATCTGCCCTT GGAACTTTCC CCCATGAGTG TCACTTTAGC
  AGGGACAGTG ACACAGATGA GCTCAGCATA TGGATGAGAC ATGCTCATTG CAGCACTATC
  CGAAATAGCC AAGACTGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47793969	NES11992967	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33401458					SNP	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47793969	NES11992967	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:116659297 () rs orientation: forward

Symbol	Name	Function Class
Rbms3	RNA binding motif, single stranded interacting protein	within coordinates
Rr202809	regulatory region 202809	1211 bp proximal