rs33401979 SNP Detail

Summary

• ID
  rs33401979
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:88197180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCTG GCAGCCACGA AGGCCTGATG
  R
  GGCACGAGGT GTGCGGGGCG AAGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46271182	mCV24212794	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	A
ss145439791	ENSMUSSNP6653221	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33401979					SNP	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:88197180 () rs orientation: forward

Symbol	Name	Function Class
Cbln1	cerebellin 1 precursor protein	within coordinates
Cpgi20770	CpG island 20770	861 bp distal
Cpgi20771	CpG island 20771	within coordinates
Cpgi20772	CpG island 20772	1043 bp proximal
Rr382427	regulatory region 382427	1277 bp downstream
Rr666962	regulatory region 666962	1824 bp proximal
Rr666963	regulatory region 666963	1949 bp proximal
Tssr2634	transcription start site region 2634	1974 bp downstream
Tssr82308	transcription start site region 82308	630 bp upstream
Tssr82309	transcription start site region 82309	443 bp upstream
Tssr82310	transcription start site region 82310	250 bp upstream
Tssr82311	transcription start site region 82311	91 bp upstream
Tssr82312	transcription start site region 82312	87 bp downstream
Tssr82313	transcription start site region 82313	116 bp downstream
Tssr82314	transcription start site region 82314	1569 bp downstream
Tssr82315	transcription start site region 82315	1609 bp downstream
Tssr82316	transcription start site region 82316	1648 bp downstream
Tssr82317	transcription start site region 82317	1813 bp downstream
Tssr82318	transcription start site region 82318	1991 bp downstream