rs33403357 SNP Detail

Summary

• ID
  rs33403357
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:132571718 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGGCGCGTG CCACCGACCC CCTCCTCACA TACACATGCA
  CGCACGCACA CACACAAATT GTAGATCTCC CCCCACCCCC AGTTCCAGAG GTCACCCTTC
  Y
  TCCAAAAAAA TTTAAGATAA AATTATAAAG GGGGAGGGGG TGAGTCAGTC AACGAGGAAA
  GCAAAGAGCA GTCTCCAACC CGAGATACAC CGGTGTGGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45774666	mCV23253975	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss144496924	ENSMUSSNP2349701	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
ss321694538	CHEV_5_133018749	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs33403357					SNP	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:132571718 () rs orientation: forward

Symbol	Name	Function Class
Auts2	autism susceptibility candidate 2	within coordinates
Cpgi16710	CpG island 16710	539 bp distal
Cpgi16711	CpG island 16711	within coordinates
D5Mit324	DNA segment, Chr 5, Massachusetts Institute of Technology 324	1807 bp distal
Gm28616	predicted gene 28616	1556 bp upstream
Rr621808	regulatory region 621808	1619 bp distal
Rr621809	regulatory region 621809	518 bp distal
Rr621810	regulatory region 621810	within coordinates
Rr621811	regulatory region 621811	455 bp proximal
Rr621812	regulatory region 621812	1066 bp proximal
Rr621813	regulatory region 621813	1567 bp proximal
Tssr53594	transcription start site region 53594	858 bp upstream
Tssr53595	transcription start site region 53595	665 bp upstream
Tssr53596	transcription start site region 53596	493 bp upstream
Tssr53597	transcription start site region 53597	257 bp downstream
Tssr53598	transcription start site region 53598	284 bp downstream
Tssr53599	transcription start site region 53599	484 bp downstream