rs33403773 SNP Detail

Summary

• ID
  rs33403773
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84423878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCCAAGTCC TGGAATCAAA GGTGTGCACT ACCACCACCA
  GACCCTCATA CCATTCCTAA CCCCATTGCC TCCTCCAAAA CAGAAACAAG ACTCTGTAAG
  R
  TAAAAGTGTT TGACCCAAGA ACTCATTAGG GAAGGCAGCA TTGGTATTTA AACCTGGCCT
  CACTGAACAA TACTCTGTCA TGACCAGGCC CCACCCACT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46272008	mCV23003518	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss145360192	ENSMUSSNP4599753	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss322745521	CHEV_8_86221148	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33403773					SNP	A	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84423878 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20652	CpG island 20652	597 bp proximal
Cpgi20653	CpG island 20653	977 bp proximal
Pkn1	protein kinase N1	within coordinates
Rr666288	regulatory region 666288	1477 bp distal
Rr666289	regulatory region 666289	15 bp proximal
Rr666290	regulatory region 666290	1920 bp proximal
Tssr82047	transcription start site region 82047	1846 bp downstream