rs33404902 SNP Detail

Summary

• ID
  rs33404902
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:3766469 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAGTTAGA GCTGGGGTCA
  CTAAAGCATG CACTGGTCAG GCTGAGTGGC TCTTATTAAT GGTGCATTAG GAAAAACAGC
  CTTGGTAGTG GGCTCAAGGA ATAGGAGCCA CCCTTCTGAT TCACCCCGAG GCAATGGGCG
  CTAGGCTTAG TAGCAACTGC TCCTCTTCTC ACAGATCCAG CCATCTCTCT CATTGGTACA
  Y
  GGTGCATCAT TCCACAGCCC CGAGTGCAGC ATCATGATAC AGTCCTCATG TCCTCTGGAA
  TCATTGGGCT CTCCAGAGTT CCAGTGGCTG TGGTAGTTCA GTGGGAGTGT TACTGGGACT
  GAGGATAGAC CTAGGGTCAA GCTTCCTTTC CCAGGCCTTG CTTGTTTGCT TGGCTCTGCT
  CTAGACATTC TGAATGCCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46271740	mCV22849359	ABI	CRAMUS_MOUSE	f	SNP		C	T					T		T
ss61076276	NES16052993	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T		C	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33404902					SNP	C	C	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61076276	NES16052993	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:3766469 () rs orientation: forward

Symbol	Name	Function Class
Clec4g	C-type lectin domain family 4, member g	within coordinates
Gm16553	predicted gene 16553	within coordinates
Tssr80223	transcription start site region 80223	1078 bp downstream
Tssr80224	transcription start site region 80224	1093 bp downstream