rs33405068 SNP Detail

Summary

• ID
  rs33405068
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:5936081 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TCAGTACCTG GGGAGCAACT GAATTTAGCT GAACTGAAAA ATGCAACAGG CATCTCAAGG
  AGCAACAACA AAGCAGCAGG TTGCTCCCCA GCCTGGAGCT GGGCCAGCAG GCCGGGCTCT
  GCTCCAGAGG AAGCTCACTT CCTTCCGCAG GCCGCCCTCC CATTTATCTC CCCCTGCCCT
  CGCCGCAGAG GGCTGAGGTT GATGTGACAT GCCTCCAAAA AACATCCCAC AATGTGACAA
  GCAGAATTCT ATCGACTGTG CAGCTGTGTG AGGACAGTAC CTCCACGTGG TTTCTTTGTC
  S
  GTTGTCCTGG GCTGTGTAGA CTGGCAGTGT TTGTCCCCTT GCCTGTCCCT CAGCCTCAGC
  CCCTTCCTTG CTGCCAGGAG ACAGCGGATG GGGTTTCTTG ACTGACAGAC TACACTGCCA
  TTTGTTTCTT TCCAGGATTT TTTTAAGGAA AAATTTCAAA TGTGGGCAAA AGTCAAAAAA
  ATTTTCCACT GAACATTATG AAGCACCCGT TAAAGCGTGT CGGAGCTTTA AGTACCTGGC
  CCATGGCTTG TTCACAGATA GTTTCTATTA CTTTTGTATG TATTTCAAGG TAGTGGGGCC
                                                                   
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss39531977	mCV23634261	ABI	CRAMUS_MOUSE	f	SNP		G	C
ss60525982	NES16545875	PERLEGEN	MM_PANEL2	f	SNP	G		C	C	C	C	C	C	C	C	C	G
ss134539808	ENSMUSSNP942723	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33405068					SNP	G	G	C	C	C	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60525982	NES16545875	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:5936081 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8563	CpG island 8563	1198 bp proximal
Rr332307	regulatory region 332307	within coordinates
Rr332309	regulatory region 332309	1720 bp proximal
Rr342320	regulatory region 342320	within coordinates
Rr370166	regulatory region 370166	98 bp downstream
Snx9	sorting nexin 9	within coordinates