rs33405513 SNP Detail

Summary

• ID
  rs33405513
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:129916721 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTAACCCT TCTCTGTTTT
  GTTTTGGGAC AATGCCTCCG GTAACGGATG TTGCCTTGGA TCTCGCTGTT CTCACGTCTC
  AGCCTCCTAG TACTGGTCAC GCAGGAAAAA CTCTGTTTTT CTGTTATAAA GAATTTACTA
  ATAAACGTGT TTGGAAATAT TAAATTACAT AAGCAGAATT TCGCTAAAGG AGCTCTGCTC
  Y
  CAACATGTCT GGAAGATAGT GAACTAGCCG AGCTTATTAG AAACTATGAA AAAGGGGCTG
  ATGAGATGGC TCAGCGGAGA AGAGCACTGA CTGCTCTTCA AAAGATCCGG AGTTCAAATC
  CCAGCAACCA CAAAGTGGCT CACAACCACC CATAACGAGA TTTGACACCC TCTTCTGGTG
  TGTCTGAAGA CAACTACAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45775496	mCV25038608	ABI	CRAMUS_MOUSE	f	SNP		T					C
ss60840613	NES16012841	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T	C	C		T	C	C	C		T	C	C	T		C
ss321692418	CHEV_5_130363750	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33405513					SNP	C	T	C	T	C	C	C	T	C	C	C	T	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60840613	NES16012841	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:129916721 () rs orientation: forward

Symbol	Name	Function Class
Chchd2	coiled-coil-helix-coiled-coil-helix domain containing 2	410 bp upstream
Cpgi16684	CpG island 16684	259 bp distal
Rr399383	regulatory region 399383	371 bp downstream
Rr621372	regulatory region 621372	421 bp distal
Rr621373	regulatory region 621373	within coordinates
Tssr53498	transcription start site region 53498	723 bp upstream
Tssr53499	transcription start site region 53499	575 bp upstream
Tssr53500	transcription start site region 53500	451 bp upstream
Tssr53501	transcription start site region 53501	400 bp upstream