rs33405720 SNP Detail

Summary

• ID
  rs33405720
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:100936347 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCTAAAT TCACCTGTTT
  CTTCCCTTTA TCTCCAAGTT TTTCTTCTTC CATCCTCTTC AAATATGCAA AAGTATCCCT
  GGGCCAGATA AAGGCCCTAT ATGGGCTTTA GTAGAGCCAA GTAATTGTTC TGATCCTTCT
  CTGTCTCTCT CTTTAGCTCT CAGAAAAAGT CTAGAACCTT CTTTTAGCTT GACCTAAACT
  W
  CACGGTACTC TTAATGCTTT TTCTTCTACC TAAGTCACAT CCACAAGGCA CACACATCTA
  GTTACACCCT AACATCAGGC AACCCTTGAG GCCTCTTCGT GTGTCAGTGA AACCTCTTCA
  TCTCCCACGG GATGCTCAGC CCAGGAAGGT AAAGTAAAGC CAGGGCCATG CAAAGCTCAA
  AGACAAGCTT GAAATAAAAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46810328	NES10727269	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33405720					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46810328	NES10727269	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100936347 () rs orientation: forward

Symbol	Name	Function Class
Cd101	CD101 antigen	Intron
Rr581944	regulatory region 581944	1906 bp distal
Rr581945	regulatory region 581945	515 bp proximal
Tssr34767	transcription start site region 34767	493 bp downstream
Tssr34768	transcription start site region 34768	512 bp downstream