rs33408127 SNP Detail

Summary

• ID
  rs33408127
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100938425 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACAGAGGA ACTATCAGGG
  GAGTTTTAGC AGAAACACAG CATGCCCCCC CCCCCTGGAA ACAAAGTTTC ATATGATTAA
  CTGGATTCAT ATTATTATTG GAAAGTGGGG GAGGTAGTCA AGGCTGTAAA GAAAAGGTCA
  CAGGCTTTTG CAGCTGTTTG TTTCACCAAT GATGAGTTCC TGAATTAGGC CATCTAAAAG
  W
  ATGGCAGGAC GGAGAGATGA AACATCAGGT CCTTGCAGGC ACCTCTGCAA GACAAGATAC
  CAAATGTCAG AGAGCCTCAT GGTAAAGTGC AGTCTCTCCT CTCTGTTCAA GACAGTGGGA
  CCTGATGGAA GTGAACAGGA GAGAACATGA CACACTGTCA TGCTGGGAAA GTAGGGGAGG
  TCCCCTAGGA GATGGCCACA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46810355	NES10727282	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33408127					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46810355	NES10727282	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100938425 () rs orientation: forward

Symbol	Name	Function Class
Cd101	CD101 antigen	1553 bp upstream
Gm66113	predicted gene, 66113	641 bp upstream
Rr375455	regulatory region 375455	29 bp upstream
Rr581945	regulatory region 581945	1292 bp distal
Rr581946	regulatory region 581946	460 bp proximal
Tssr34767	transcription start site region 34767	1576 bp upstream
Tssr34768	transcription start site region 34768	1551 bp upstream