rs33408133 SNP Detail

Summary

• ID
  rs33408133
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100938563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGGCTTT TGCAGCTGTT
  TGTTTCACCA ATGATGAGTT CCTGAATTAG GCCATCTAAA AGAATGGCAG GACGGAGAGA
  TGAAACATCA GGTCCTTGCA GGCACCTCTG CAAGACAAGA TACCAAATGT CAGAGAGCCT
  CATGGTAAAG TGCAGTCTCT CCTCTCTGTT CAAGACAGTG GGACCTGATG GAAGTGAACA
  S
  GAGAGAACAT GACACACTGT CATGCTGGGA AAGTAGGGGA GGTCCCCTAG GAGATGGCCA
  CAGTTGCAGG AGGTAGAGGA CATGTCTTGT TTGGGAGAGT GAGTGGTTAA AGAAAACCTT
  CAGGACAAAG GTATTTTAAG GTAAACTTTA TTTCCTTAGT GGGATGATCA CAGATTGGGG
  GCACATCTGC AAAGGAGGAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46810361	NES10727284	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33408133					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46810361	NES10727284	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100938563 () rs orientation: forward

Symbol	Name	Function Class
Cd101	CD101 antigen	1691 bp upstream
Gm66113	predicted gene, 66113	503 bp upstream
Rr375455	regulatory region 375455	within coordinates
Rr581945	regulatory region 581945	1430 bp distal
Rr581946	regulatory region 581946	322 bp proximal
Tssr34767	transcription start site region 34767	1714 bp upstream
Tssr34768	transcription start site region 34768	1689 bp upstream