rs33408379 SNP Detail

Summary

• ID
  rs33408379
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112293634 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGCTCTGT CCTACCTTCC
  TCACAGACTA ATATGGCCAC TGGAGCCCTA CTGTGTGGTT TTCCTGCTCT TCACACTGAA
  CATGATGTAG TTAGGTAGTG CAAGATATCT GGAGATGGTT AAAGTGCACA GAGAGAAGCT
  GTGCGGGTGA CGTAGACAGT GTCCTTGAAT GGCAGGGACC CGAGCCCCAC AGAATCCAGG
  R
  ATCACACAAG TGGAGGGAAA TGGAAGATAT CCAAGCCTCT AATCCCAACT CCACTGGGTG
  GGATCGTGTA GGAGAGGGGC ACTCGAGGCT GAGCCGAGGA CTGCTGGAGC TATCTCCTAT
  TACCTCCCAC CCCTCATCCT GGTTTCCCAA GATGGTGTCT GATGGAGCAG TTTCAGGACT
  GCAGAGGTTA GAGCATAAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss47295329	NES11379528	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs33408379					SNP	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47295329	NES11379528	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112293634 () rs orientation: forward

Symbol	Name	Function Class
Gm60261	predicted gene, 60261	1984 bp upstream
Rr473423	regulatory region 473423	1773 bp proximal
Rr473424	regulatory region 473424	1995 bp proximal