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rs33408405 SNP Detail
Summary
  • ID
    rs33408405
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr17:15418147 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          TGTCT TAAAAATAAG TTGGGTATCT
    K
    CTGAGAAATA ATCTCTATCA GGAGG                                      
    
    K = G/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
C57BL/6J
DBA/2J
LG/J
SM/J
ss39532554 mCV25027489 ABI CRAMUS_MOUSE f SNP G G T G
ss145202484 ENSMUSSNP936544 ENSEMBL ENSEMBL_Sanger f SNP G G G
ss325306436 CHEV_17_15334849 CHEVERUD SCREENING_POP f SNP G G
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
C57BL/6J
DBA/2J
LG/J
SM/J
rs33408405 SNP G G T G G G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr17:15418147 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm35502 predicted gene, 35502 within coordinates
Rr329518 regulatory region 329518 854 bp proximal
Rr334312 regulatory region 334312 654 bp proximal
Rr340587 regulatory region 340587 1748 bp distal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory