rs33408939 SNP Detail

Summary

• ID
  rs33408939
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100938955 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGAGGAAA TGGTATTTAA
  TCCAACCATC TATTCTTTAT CTATTTACAC ACCTACTCGC CTGAACCATT CTCCCCTCTG
  GTTAAATTCA CTAGCTGTTG TCTCTTAAAA AAATTAGCTC TCTGAAGCCA GTTAACTGCA
  AGTGCTTTTG CAAAAGCTTC TGGACTTCCC TCTTCAAAGT TCTGTGTGAG ATCTGGAGGG
  Y
  AAAGGAAGGG CAAGGAAGCT CCACCCCTCG GGAGCCTGGA ATCCACGTTA GCAAACAACT
  GAAGCCACAG GAGGAAGCAG GTCTGGGGGG GGGGGGGTCC ATTGCTTGGC AGGGCAAGAA
  AAACCCTAGG AATGAATGGA CAGAGAGGCA GGGATGGCCA CCAACATCAT GGAGAAAACA
  CTTGCTTTGG AGTAGATCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46810367	NES10727286	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33408939					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46810367	NES10727286	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100938955 () rs orientation: forward

Symbol	Name	Function Class
Gm66113	predicted gene, 66113	111 bp upstream
Rr375455	regulatory region 375455	within coordinates
Rr581945	regulatory region 581945	1822 bp distal
Rr581946	regulatory region 581946	within coordinates