rs33409638 SNP Detail

Summary

• ID
  rs33409638
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100939283 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAATGAAT GGACAGAGAG
  GCAGGGATGG CCACCAACAT CATGGAGAAA ACACTTGCTT TGGAGTAGAT CCTTGCAGAT
  CCAGTGTGAC TCCAGTAGGT AAGACAGCAT CGGAAGGGAG ATTCCAGTAA GTAGTAAAAT
  CCCAAAGACA GGCAGGGGCA TGCTGGCTGT GTGGGAGAGC ACGAATGGGC AGGCCACTTA
  Y
  GGCTTAGATT TCAAACTCAT CCTCCAAGTC TGTAATTATA GTATTAGCAC AAGTTAAAAT
  GCAGAAATCT GTTCGCTATT TTGGCTAGAG CTGTCATAAG GCCACCTTCT GGTATTAATA
  TTTTAGACAA GTACACTGTA TCATCTAGTT GCTACTGTGT AACAAACAGC CATAAGACTT
  GGTGGCTTCA GTGGCAAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46810376	NES10727289	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33409638					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46810376	NES10727289	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100939283 () rs orientation: forward

Symbol	Name	Function Class
Gm66113	predicted gene, 66113	within coordinates
Rr375455	regulatory region 375455	within coordinates
Rr581946	regulatory region 581946	207 bp distal