rs33411253 SNP Detail

Summary

• ID
  rs33411253
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100940170 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTTTGTTT GTTTGTTTGT
  TTTTTTCAAG ACAGGGTTTC TCTGTATAGC CCTGGCTGTC CTGGAACTCA CTTTGTAGAC
  CAGGCTGGCC TCGAACTCAG AAATCCGCCT GCCTCTGCCT CCCGAGTGCT GGGATGAAAG
  GCGTGTGCCA CCACGCCTGG CGACTTTGGT GGTATTGTTT GCTTTGGTCT GTCAATGGTT
  Y
  CCTATCTGGG GCGAATGGAT CATTGCTCCA GGAATTGGGT AAATCCAAAC GTAAGCGATG
  AGTTAACTAA CAGGTGCTAA CTCTTTGTTG AAGGGAGCAG CAAAATGACG CAGAAAAGGG
  GGAAGATTTA AAATTCAGAG TGTCAGTGCC TCTGTCAGGT GCAGTAAAGA GAGAACGGTC
  TTAGAAATAA GAAGCATGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46810403	NES10727038	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33411253					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46810403	NES10727038	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100940170 () rs orientation: forward

Symbol	Name	Function Class
Gm66113	predicted gene, 66113	within coordinates
Rr375455	regulatory region 375455	within coordinates
Rr581946	regulatory region 581946	1094 bp distal