rs33411515 SNP Detail

Summary

• ID
  rs33411515
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31426880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGAT GAACTTCGGC CCAGACCGCA
  Y
  TGTGGAAGCC GGTGGGTTTG GAAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	SM/J	WSB/EiJ
ss39533321	mCV24710836	ABI	CRAMUS_MOUSE	f	SNP	T	T				C	T
ss60561814	NES16488877	PERLEGEN	MM_PANEL2	f	SNP		T	T	T	T			T			C
ss325358918	CHEV_17_31344851	CHEVERUD	SCREENING_POP	f	SNP									C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	SM/J	WSB/EiJ
rs33411515					SNP	T	T	T	T	T	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60561814	NES16488877	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31426880 () rs orientation: forward

Symbol	Name	Function Class
Rr339574	regulatory region 339574	within coordinates
Rr370214	regulatory region 370214	within coordinates
Tssr143654	transcription start site region 143654	143 bp upstream
Tssr147277	transcription start site region 147277	891 bp downstream
Tssr147278	transcription start site region 147278	907 bp downstream
Ubash3a	ubiquitin associated and SH3 domain containing, A	within coordinates