rs33411727 SNP Detail

Summary

• ID
  rs33411727
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:100935836 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAAGGGTC CTTAAAACAG
  GGTGAAAAAG CCCTTTAATC TTTATTCTCA TTAATCTCCA ATGGAAATGT CCTATTTCCC
  TTCAGTGATG GATGCAGACG TGTAACCATA GCTACTTGCA TATTATATGG CAATTTTTGT
  AGACATATTA GAATATTCTC TTCATACCCA CCACTTCTCT GAGCTTGGTG ATTAAAAAAT
  R
  GTCCTCCAGA CCTTGTTGTA TAGCACATAA ATAAGAATGG AAATGAACAC ATTATGATTT
  ATTTTTAAAT ATTGTTTATT CACTATAAAA TTCAGGTAGG CCTACTTTAG GCTTCTACTA
  GTGCTGTGAT TACAGGTGCC ATCACATTGG CACTGAAAAT ATTTTGATAA CTTTATTTCA
  ATAAGGCCAG TTTATACTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46810310	NES10727262	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33411727					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46810310	NES10727262	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100935836 () rs orientation: forward

Symbol	Name	Function Class
Cd101	CD101 antigen	Intron
Rr581944	regulatory region 581944	1395 bp distal
Rr581945	regulatory region 581945	1026 bp proximal
Tssr34767	transcription start site region 34767	1004 bp downstream
Tssr34768	transcription start site region 34768	1023 bp downstream