rs33412064 SNP Detail

Summary

• ID
  rs33412064
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:109747983 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCCAGCAG CAGCAGCACA
  ACCTTGTCAC TCATTCCAGA GAAACACGCC CCATTCCTCT TGACCAATAA TGGCTCCACT
  GCCTGCATAG TAATGAGCTC GAGACCTCCC CTGACCAATA GCGCTCCCGG AGCGGGGTTA
  GTTTTGCATG TACCTAAATG ATTTGCATAA CCCGGCGGCC AGGGGCTCCC GAGGCGAGCG
  W
  GCAACCCTAG AAGGGAAAAG GACGCGCGGA GCGGGAGCCG CCTCGGGGAG AGCGCGGACA
  ACCAGGGTGT TTGTGAGAGC TGGGGCGGGG GTTGGGACGC CTGGCCGGCA TGGCTGGAGG
  CTGCGCTCCG CAACCTTGAG GAGCTGTGCG GCTGGAGGAG GCCCGGGACA GGAGGCGGCG
  GCGATGGCAG CGCGCGGCCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45275996	mCV23138109	ABI	CRAMUS_MOUSE	f	SNP	A	T	T
ss147206180	ENSMUSSNP284505	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs33412064					SNP	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:109747983 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12039	CpG island 12039	within coordinates
Lgr4	leucine-rich repeat-containing G protein-coupled receptor 4	mRNA-UTR
Rr397176	regulatory region 397176	within coordinates
Rr562509	regulatory region 562509	within coordinates
Rr562510	regulatory region 562510	20 bp proximal
Rr562511	regulatory region 562511	125 bp proximal
Rr562512	regulatory region 562512	164 bp proximal
Rr562513	regulatory region 562513	552 bp proximal
Tssr19307	transcription start site region 19307	46 bp downstream
Tssr19308	transcription start site region 19308	within coordinates
Tssr19309	transcription start site region 19309	1 bp upstream
Tssr19310	transcription start site region 19310	41 bp upstream
Tssr19311	transcription start site region 19311	85 bp upstream