rs33412119 SNP Detail

Summary

• ID
  rs33412119
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100940639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAAATTCC TGGCTCTTGC
  CAAAATATTT TTTTTTCTCT ATCTATTTTA GTTGCCTCCA TTTCTGCCAG AATTGAGCAC
  TGATGGGGTG AAGTTGCTTC TTTTCTGGAG GGAGGGGGGG AAAAGCTTTC TGTTGTCAAA
  GAAAAGAAAA AAAAAGAGAG AGAGAGAGAG AAGGAGACAA AAAGACAGCT ATTCTGTTGC
  Y
  TTGGGAATCA TTGTATGGCA GCTGTTGAAA GAATGTAAGA TGTAGTTTCT CCCAAAGCAT
  GGAAGGGAGA GGACAGGGAT GCTTAGAATG CACTAGAAGA AAGACCTGTC TCAGTTCCTG
  CAAGGCAGAT AAAAGAGATC GATATTTCCT CAGGCTGACA CACCTCACTA TTAGTTCCAC
  AGAGGCACAG AAAGAGAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46810409	NES10727040	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33412119					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46810409	NES10727040	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100940639 () rs orientation: forward

Symbol	Name	Function Class
Gm66113	predicted gene, 66113	within coordinates
Rr375455	regulatory region 375455	433 bp downstream
Rr581946	regulatory region 581946	1563 bp distal