rs33412122 SNP Detail

Summary

• ID
  rs33412122
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100940699 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTGCCAG AATTGAGCAC
  TGATGGGGTG AAGTTGCTTC TTTTCTGGAG GGAGGGGGGG AAAAGCTTTC TGTTGTCAAA
  GAAAAGAAAA AAAAAGAGAG AGAGAGAGAG AAGGAGACAA AAAGACAGCT ATTCTGTTGC
  TTTGGGAATC ATTGTATGGC AGCTGTTGAA AGAATGTAAG ATGTAGTTTC TCCCAAAGCA
  Y
  GGAAGGGAGA GGACAGGGAT GCTTAGAATG CACTAGAAGA AAGACCTGTC TCAGTTCCTG
  CAAGGCAGAT AAAAGAGATC GATATTTCCT CAGGCTGACA CACCTCACTA TTAGTTCCAC
  AGAGGCACAG AAAGAGAGCA TTATGGTCTC GGATCATACA CAACTAGGGC CCAGAAACAA
  GCAGGGACCT TTCCTTAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46810412	NES10727041	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33412122					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46810412	NES10727041	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100940699 () rs orientation: forward

Symbol	Name	Function Class
Gm66113	predicted gene, 66113	within coordinates
Rr375455	regulatory region 375455	493 bp downstream
Rr581946	regulatory region 581946	1623 bp distal