rs33412524 SNP Detail

Summary

• ID
  rs33412524
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:8760406 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             TTCAAACTGT TTTTCAGGTC TGGTCGCTGC TAGTTAGTGC CAATAACTTA
  M
  AATTAAGCAT GTACCATGAT CAGTCACTGT ACCAGCGCTT TATAAATCTC           
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	NZW/LacJ	PWD/PhJ
ss46810453	NES10978781	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	NZW/LacJ	PWD/PhJ
rs33412524					SNP	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46810453	NES10978781	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:8760406 () rs orientation: forward

Symbol	Name	Function Class
B630019K06Rik	RIKEN cDNA B630019K06 gene	within coordinates
Cpgi22597	CpG island 22597	310 bp distal
Rr689805	regulatory region 689805	1775 bp distal
Rr689806	regulatory region 689806	725 bp distal
Rr689807	regulatory region 689807	228 bp distal
Tssr160504	transcription start site region 160504	1795 bp downstream
Tssr160505	transcription start site region 160505	1744 bp downstream
Tssr160506	transcription start site region 160506	1713 bp downstream
Tssr160507	transcription start site region 160507	1090 bp downstream
Tssr162869	transcription start site region 162869	1237 bp upstream
Tssr162870	transcription start site region 162870	1211 bp upstream