rs33412576 SNP Detail

Summary

• ID
  rs33412576
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47035643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGACCTCT CCCCTCCACA
  AGGCTCCTTT GCGCCTTAAC CTCTATCCTG GGCATCCTTC ACCTCTCATG GTTGGCAGCC
  CTAACACTTC CTGTCTCTGT CTCTCTGAAG ATTTGACAAG CTGGTGTTTG TAGGGGCGAG
  TGAGGACCGG GCCTCCCAGC TGCGTGTGCT GAGCGCCATC ACACGGAAGT ATGCGTAGTC
  R
  GAGAGCTGGG GTGGGGGCTT AGACAGTTAG GGGATGTGTG CGAGTCAGCA TGACTTCTGA
  GGGAGGAGGT GAGGCCAGCT TTAACATCCC TGGTGTGGGT GTGATAGGTT CAAGCTGGAG
  GCCTCTGTGA GCCTGGCAAA CGTGCTGGAT TGCTGCCCAC CCCAGCTGAC TGGTGCAGAT
  CTCTATTCTC TCTGCTCTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39533332	mCV25217952	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G	G
ss145701250	ENSMUSSNP520680	ENSEMBL	ENSEMBL_Sanger	f	SNP			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33412576					SNP	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47035643 () rs orientation: forward

Symbol	Name	Function Class
Gnmt	glycine N-methyltransferase	947 bp downstream
Pex6	peroxisomal biogenesis factor 6	within coordinates
Rr331605	regulatory region 331605	358 bp proximal
Tssr148377	transcription start site region 148377	1597 bp downstream
Tssr148378	transcription start site region 148378	1610 bp downstream
Tssr148379	transcription start site region 148379	1627 bp downstream
Tssr148380	transcription start site region 148380	1992 bp downstream