rs33412606 SNP Detail

Summary

• ID
  rs33412606
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:100935987 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATATTCTCT TCATACCCAC
  CACTTCTCTG AGCTTGGTGA TTAAAAAATG GTCCTCCAGA CCTTGTTGTA TAGCACATAA
  ATAAGAATGG AAATGAACAC ATTATGATTT ATTTTTAAAT ATTGTTTATT CACTATAAAA
  TTCAGGTAGG CCTACTTTAG GCTTCTACTA GTGCTGTGAT TACAGGTGCC ATCACATTGG
  Y
  ACTGAAAATA TTTTGATAAC TTTATTTCAA TAAGGCCAGT TTATACTATA GTCCTATGCA
  TTTTATAATA TGCATTTATA AGTTACACTG AGATGATCTT TGTATGTGGC ACACAGCCTG
  CCTGTTAACT GCTCTACATG GTAAGGAACT ATTTTGTTCC CTGCTAAATT CACCTGTTTC
  TTCCCTTTAT CTCCAAGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46810319	NES10727265	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33412606					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46810319	NES10727265	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100935987 () rs orientation: forward

Symbol	Name	Function Class
Cd101	CD101 antigen	Intron
Rr581944	regulatory region 581944	1546 bp distal
Rr581945	regulatory region 581945	875 bp proximal
Tssr34767	transcription start site region 34767	853 bp downstream
Tssr34768	transcription start site region 34768	872 bp downstream