rs33412879 SNP Detail

Summary

• ID
  rs33412879
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112296327 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGTGTGGC CTCCCCTCTC
  CCTCAGGTAC TCATATTTCT GGGGGCCGGA GTCCTCAGAA TCTGTCTAGC AATGACGTAA
  TGAGAGTTGG TTGCTAGGCA ACCTGCCTCA GCTCAGTCAG AGAACCCTGC TCTGGTTTGA
  AGGGCCCCTG CCGATTTCTT AAAATATCAG CTTTTAGCAC ACATCTCATC CTAGAGCAGA
  R
  AGAATACAGT GCTGGCAAGC CCCGCAGGCC TCCCTTCCCC GACGATGGAT GCTGGCTTCT
  GAGAGCTGAT CGTGCGAGAC TAACCTCCTT GTCTCTCCTT GTCACGGTCC TTAGCCTGTA
  GAAGAGGGAC CGGTGATTGC GGTGACTTCA GCAGGCATTG GCAGAGTCTG CCGTGTGGTT
  CTTGAGGATG AAATGGGAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47295386	NES11379358	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33412879					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47295386	NES11379358	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112296327 () rs orientation: forward

Symbol	Name	Function Class
Gm29890	predicted gene, 29890	1919 bp downstream
Gm60261	predicted gene, 60261	within coordinates
Rr473423	regulatory region 473423	699 bp distal
Rr473424	regulatory region 473424	within coordinates