rs33413299 SNP Detail

Summary

• ID
  rs33413299
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:27748481 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CATGTAGAGG GAAGAGGTAA TTTTATGGGA ATCTGTTCCC GAGCTCTCAT AGGGATGAAA
  CTCAGGTTAG ATTTGGCAAT AAGTACCTTT ATCTGCTTGG TCATCTCAAT CCCCCATATC
  CTTTTATATT CCATTAGAAG ACTTGATATG AATGAGTGCC TGCTCTGAGA GAGGCAGAAA
  TCACCATAGG CAAAATGGGT CTGCAAGAGA AAGAATTGAG CAGGGAATTT GTAAGAAAAC
  TCTAAAACGA TCATTCTCAG GGCCATGTGG TTCGCAAAGC CCAGGAGGGA AGCTTATCTT
  M
  CCTGGAAAGC TACTCAATGG AGCTACCAAG GCAGGGAAAC GGTGCTTACC CTCAGGCTCA
  GGTCCCTCCT AGCTGTGGCT GTAGGCTTGT GGGCAATCAT CTTTAACTCC TCAACTTATC
  CAAGTGCCTT AGGGGTAATA GAACACTGTC TTAGTCAGTG TTCTATTGCT GTGACGAGAT
  ACCATGACCA CTGCAACTCT TATAAAAGAG CACATTCAAT TGAGGTTTCT TGCTGTTTCA
  GAGGTTTAGT CCATTGTCAT CATGGCAGGG AGCATGGTGG CACACAGGCA GACATGGTGC
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss46272744	mCV24519114	ABI	CRAMUS_MOUSE	f	SNP	C	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs33413299					SNP	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:27748481 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20220	CpG island 20220	1485 bp proximal
Eif4ebp1	eukaryotic translation initiation factor 4E binding protein 1	1874 bp upstream
Rr176179	regulatory region 176179	1481 bp distal
Rr186444	regulatory region 186444	919 bp proximal
Tssr76776	transcription start site region 76776	1868 bp upstream
Tssr76777	transcription start site region 76777	1879 bp upstream
Tssr76778	transcription start site region 76778	1942 bp upstream
Tssr76779	transcription start site region 76779	1976 bp upstream