rs33413329 SNP Detail

Summary

• ID
  rs33413329
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:70731938 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTCC CTCCCAGAGT GGCTGCCATT
  Y
  CTCCGGCCCA CTTTCTGCCC TTCAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46273104	mCV27579078	ABI	CRAMUS_MOUSE	f	SNP	T	T						C		T
ss60633386	NES16277716	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T	C	T		C	T	T	T		C	C	T	C		T
ss145123143	ENSMUSSNP3192980	ENSEMBL	ENSEMBL_Sanger	f	SNP		T								T
ss322699458	CHEV_8_72803187	CHEVERUD	SCREENING_POP	f	SNP													T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33413329					SNP	T	T	C	T	T	C	T	C	C	T	T	T	T	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60633386	NES16277716	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:70731938 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20447	CpG island 20447	770 bp distal
Gm38427	predicted gene, 38427	within coordinates
Rr177423	regulatory region 177423	863 bp proximal
Rr186738	regulatory region 186738	537 bp distal
Tssr2595	transcription start site region 2595	1202 bp downstream
Tssr77724	transcription start site region 77724	1175 bp downstream