rs33413366 SNP Detail

Summary

• ID
  rs33413366
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118733712 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCAT AAATTGAGGC AGAAATTTGA
  W
  GACATAAAAT AAGGTTTCCA GCTTT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45275081	mCV22544950	ABI	CRAMUS_MOUSE	f	SNP	T	T	A
ss147316861	ENSMUSSNP4245913	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320472570	CHEV_2_118728967	CHEVERUD	SCREENING_POP	f	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs33413366					SNP	T	T	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118733712 () rs orientation: forward

Symbol	Name	Function Class
Bahd1	bromo adjacent homology domain containing 1	Intron
Cpgi12098	CpG island 12098	88 bp distal
Rr397220	regulatory region 397220	1727 bp downstream
Rr563367	regulatory region 563367	1768 bp distal
Rr563369	regulatory region 563369	1918 bp distal
Rr563370	regulatory region 563370	within coordinates
Rr563371	regulatory region 563371	1588 bp distal
Rr563372	regulatory region 563372	1130 bp distal
Rr563373	regulatory region 563373	678 bp distal
Rr563374	regulatory region 563374	185 bp distal
Tssr19588	transcription start site region 19588	1828 bp downstream
Tssr19589	transcription start site region 19589	1743 bp downstream
Tssr19590	transcription start site region 19590	1614 bp downstream
Tssr19591	transcription start site region 19591	1568 bp downstream