rs33413400 SNP Detail

Summary

• ID
  rs33413400
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84925552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGATC AAAAAGTTAA TAGCTAAGTT
  K
  AGTGAGCTGA GGTCCTGCTG GCTCT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46273306	mCV24182183	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	G
ss145374851	ENSMUSSNP3310059	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss322748096	CHEV_8_86722822	CHEVERUD	SCREENING_POP	f	SNP					G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33413400					SNP	G	G	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84925552 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20681	CpG island 20681	850 bp distal
Cpgi20682	CpG island 20682	111 bp distal
Cpgi20683	CpG island 20683	1219 bp proximal
Gm26887	predicted gene, 26887	199 bp upstream
Gm37352	predicted gene, 37352	1946 bp upstream
Gm56830	predicted gene, 56830	338 bp upstream
Gm56836	predicted gene, 56836	within coordinates
Gm64014	predicted gene, 64014	1054 bp downstream
Rr186982	regulatory region 186982	within coordinates
Rr186983	regulatory region 186983	848 bp proximal
Rr368563	regulatory region 368563	1364 bp downstream
Tssr2623	transcription start site region 2623	1445 bp upstream
Tssr2624	transcription start site region 2624	137 bp downstream
Tssr78371	transcription start site region 78371	1507 bp downstream
Tssr78372	transcription start site region 78372	1912 bp upstream
Tssr78373	transcription start site region 78373	1937 bp upstream
Tssr82076	transcription start site region 82076	1330 bp upstream
Tssr82077	transcription start site region 82077	1243 bp upstream
Tssr82078	transcription start site region 82078	964 bp upstream
Tssr82079	transcription start site region 82079	559 bp upstream
Tssr82080	transcription start site region 82080	529 bp upstream
Tssr82081	transcription start site region 82081	500 bp upstream
Tssr82082	transcription start site region 82082	1694 bp downstream
Tssr82083	transcription start site region 82083	1807 bp downstream