rs33413478 SNP Detail

Summary

• ID
  rs33413478
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:144107470 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAGGGTTTC TCTGTGTAGC CCTGGTTGTC CTGGAACTCA
  CTTTGTAGAC CAGGCTGGCC TCAAACTCAG AAATCCGCCT ACCTCTGCCT CCCAAGTGCC
  R
  GGATTAAAGG CGTGCACTAT CACTGCCGGC ATAATCTTCT TAAAAAGAAG CAGACACCTC
  ATAAGTCAGA TTTTTTTTCT CCAAAGGAAG TACTAAGAT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45275806	mCV22515741	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
ss147788977	ENSMUSSNP6541003	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs33413478					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144107470 () rs orientation: forward

Symbol	Name	Function Class
Rr566421	regulatory region 566421	508 bp distal
Rr566422	regulatory region 566422	330 bp proximal
Rr566423	regulatory region 566423	1834 bp proximal
Snord17	small nucleolar RNA, C/D box 17	432 bp downstream
Snx5	sorting nexin 5	Intron
Tssr20523	transcription start site region 20523	527 bp upstream
Tssr26593	transcription start site region 26593	636 bp downstream