rs33413635 SNP Detail

Summary

• ID
  rs33413635
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:117234553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAG CCCGTGCTGA GAGGGCCGCA
  Y
  GCCAGTGGTT ACAGGTTTCT CTTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss45776012	mCV23796435	ABI	CRAMUS_MOUSE	f	SNP		C	C				T
ss51186308	NES13827053	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	T	C	T		C	C	T	C
ss149148154	ENSMUSSNP2279887	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C				T
ss321658433	CHEV_5_117546497	CHEVERUD	SCREENING_POP	f	SNP										C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs33413635					SNP	C	C	C	C	C	C	T	C	T	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51186308	NES13827053	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:117234553 () rs orientation: forward

Symbol	Name	Function Class
Rr618554	regulatory region 618554	1727 bp distal
Rr618555	regulatory region 618555	1864 bp distal
Rr618556	regulatory region 618556	70 bp distal
Rr618557	regulatory region 618557	274 bp proximal
Rr618558	regulatory region 618558	379 bp proximal
Suds3	suppressor of defective silencing 3 homolog (S. cerevisiae)	Intron