rs33413859 SNP Detail

Summary

• ID
  rs33413859
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:20676779 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACTG AAAAACCAAA AACCATTTAA
  R
  ACAGTAGAGA AGGGTTTAGT CCAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45275718	mCV22618173	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	G
ss146338102	ENSMUSSNP3101455	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs33413859					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:20676779 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Etl4	enhancer trap locus 4			Intron
				Noncoding-Transcript-Variant
Rr372880	regulatory region 372880			within coordinates
Rr552588	regulatory region 552588			1192 bp proximal
Rr552589	regulatory region 552589			1466 bp proximal
Tssr16448	transcription start site region 16448			114 bp downstream
Tssr16449	transcription start site region 16449			93 bp downstream
Tssr22831	transcription start site region 22831			880 bp upstream
Tssr22832	transcription start site region 22832			259 bp upstream
Tssr22833	transcription start site region 22833			243 bp upstream
Tssr22834	transcription start site region 22834			217 bp upstream
Tssr22835	transcription start site region 22835			1391 bp downstream