rs33413918 SNP Detail

Summary

• ID
  rs33413918
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:100980292 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCTAAATG GCATTCCTCA
  AGCTACTTAC TCACCTAGCC AGGTCACGCT TACACCAGAC GGGGCAGACA TGGCCTCTGC
  CACCTTGTGC CAGCTCCTGT TGTGTCCAGG AGCCCAGAGG GCCACAAGGC AAAGATAGTA
  GCCCGAGTTT TCTTTGCTAA CATCTCGCAC CAGTAGATGG TAAGAGCGGG TATCCACGTG
  R
  CTGAGAGCAA CGTGTGGTGA GCTGTGGACC AGGGAATCAC GGTCAAGCCG CGCCAGCATG
  TGGGAGGCAA GTAAAGAGGT ATCGGGTGTC TTTTTGAAGT ACCATGTCAC CTCAGGCCGG
  ACATCATCCA CACGGTCTGT TGTGATGTTG CAAGAAAGAT CCAGGTCCTT TCCTTCAGTC
  ACAGACACTG TCCTGGGCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46810949	NES10725739	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33413918					SNP	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46810949	NES10725739	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100980292 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ptgfrn	prostaglandin F2 receptor negative regulator			Coding-Synonymous
				Noncoding-Transcript-Variant
Rr581952	regulatory region 581952			1354 bp distal