rs33414419 SNP Detail

Summary

• ID
  rs33414419
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:74110780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCTCACTG GTTAGAATCC
  TTCTAGAACT GTCATTGACT TTGTTCCTTG TTGCTGCCCC ACCCTTTGCC ACATCTGGCC
  AATGTCTCAT CACTGTTCTT GGCATTGCTG GCAATGGCAC GATCTTCCTC AGAGGGGCGC
  TACAATGTTG CTTCCTGAGA TCTCAGCAAC CCCTGTGCTT GGTGAGCATT TTGTTACATA
  R
  CAATTATTGG TAATGATATT CTTATGGGTT TCCCATTTCT TGTTTGGCTC CTATCTTGGT
  GTGCACATTC TTCCATGCCT GTTCCCATCA TACATTTCAC GATCTACCAT TTTGGATGTA
  GCTCTGCCAA AATCTTTACA CTGCTCTGGA TTGTTTTTAA GAAGGCTTTT TATGTGACCT
  CAAATGCCTT CCAGTCTTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39532881	mCV25306126	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33414419					SNP	A	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:74110780 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9490	CpG island 9490	891 bp proximal
Ehd3	EH-domain containing 3	1056 bp upstream
Rr530824	regulatory region 530824	566 bp proximal
Rr530825	regulatory region 530825	855 bp proximal
Tssr145810	transcription start site region 145810	1043 bp upstream
Tssr145811	transcription start site region 145811	1069 bp upstream
Tssr145812	transcription start site region 145812	1098 bp upstream
Tssr145813	transcription start site region 145813	1117 bp upstream
Tssr145814	transcription start site region 145814	1160 bp upstream