rs33414727 SNP Detail

Summary

• ID
  rs33414727
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:100980697 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTGCAGAG CTGGAAGAGG
  AAAAACAAGC CCATCGAGTG ATCGAGTGAC GCGTGTCCCC TCTCCTCCCT TCTCCTTACC
  TCCCTCATGG TCGCCCCTTT AGGTTGATTT ATGGTGTTAA AATTAGAAGG CTTTGTACAG
  TTGAAAGTGC TAGAGGAATA GTTAATGAAT AAATTCATGA CACACACTAA ATTGGTGTTG
  R
  AAAAGAGCAA CAAAGAACAC CAGTAAAAAT CGCCTATGGC TTTTGTGTAC TTATTGTAAG
  TAGATTCTGA GAATAACAAC AGGGGTGGGT ACTATTATGG TCATTTACCG AAGCGGAGGC
  GGAAGCACAC AGTAGCTCCA GGTAGAGCCT CCCTAGCATC GCTGGCTCCA GCATCCTGGG
  GGCGGGGTGA AAACTTCTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46810958	NES10725742	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33414727					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46810958	NES10725742	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100980697 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ptgfrn	prostaglandin F2 receptor negative regulator			Intron
				Noncoding-Transcript-Variant
Rr581952	regulatory region 581952			1759 bp distal