rs33414730 SNP Detail

Summary

• ID
  rs33414730
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:100980936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTTTGTGT ACTTATTGTA
  AGTAGATTCT GAGAATAACA ACAGGGGTGG GTACTATTAT GGTCATTTAC CGAAGCGGAG
  GCGGAAGCAC ACAGTAGCTC CAGGTAGAGC CTCCCTAGCA TCGCTGGCTC CAGCATCCTG
  GGGGCGGGGT GAAAACTTCT ATGCTGATGA GCCAGGAAAG TGAAACCAGA CAATTTTCCT
  M
  GTGATTCAGC CCTTCACAAC GTGATGTATG TAGACTACAG TTCCTTCACA GTACGACGTA
  TGTAGACTAT CATTTTCTTA GACACACCTG GCTAAACCTC AAGCAGGAGA CACACACTGA
  ACCCCAAACC CAATGAGTTC TGGATTCTCC ATGCTACTGT TCTCTCATGA CTGGGGACAA
  TTAAAGTAAG CTATATTTAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46810961	NES10725743	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33414730					SNP	A	A	A	A	A	A	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46810961	NES10725743	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100980936 () rs orientation: forward

Symbol	Name	Function Class
Ptgfrn	prostaglandin F2 receptor negative regulator	Intron
Rr581952	regulatory region 581952	1998 bp distal