rs33416062 SNP Detail

Summary

• ID
  rs33416062
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:126797941 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTTGAAGC ATTTTTAAAA
  ACCCCGCTAA GTTAGAAGTA TGTGCAAGCA AGGTAGAAAA AAAATCACTT AGTAACAGGG
  GTAATTTACT AAACAGTAGC TACTATTATT ATTCATCTAT ATGTGTATGT AGTGTAGAAT
  CGTACAAAGA GAAACAAAGT GTCCCTGGTT TGAAAAATGA TTACGTATTC CATCTAAATA
  Y
  CCTGTGATTA TTCTGTTTTG CATCCACATT CCACTCTACT CTGAATTCAC TTACTAAGTG
  TGAGGCATCT GCTAGAGAAT GCTGGCCAAC ATAGAATATA GCTTTAGGAA CCACACACTA
  GACACCAACA GGCCGTGCAT GCTTCCAGGG TTCCATGGTT GTTTACTGAG ATGAGTAGGC
  TGAGGTGTAA GTCAATGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49482482	NES12883233	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33416062					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49482482	NES12883233	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:126797941 () rs orientation: forward

Symbol	Name	Function Class
4930599A14Rik	RIKEN cDNA 4930599A14 gene	1977 bp downstream