rs33416166 SNP Detail

Summary

• ID
  rs33416166
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:85919250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACATC TTTATTCCTC CAGTACTGTG
  R
  TTAGCGTTCC TAAAATTTCC TAAGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39533286	mCV23053491	ABI	CRAMUS_MOUSE	f	SNP		A	A					G		G
ss62953714	NES17409446	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	G	G	A		G	G	A	A		G	A	G	G		A
ss146152514	ENSMUSSNP4787601	ENSEMBL	ENSEMBL_Sanger	f	SNP			A
ss325486747	CHEV_17_86011162	CHEVERUD	SCREENING_POP	f	SNP													G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33416166					SNP	A	A	A	A	G	G	A	G	G	G	A	A	G	G	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62953714	NES17409446	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:85919250 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9587	CpG island 9587	834 bp proximal
Cpgi9588	CpG island 9588	1782 bp proximal
Gm55781	predicted gene, 55781	59 bp downstream
Gm55782	predicted gene, 55782	1560 bp upstream
Rr340290	regulatory region 340290	849 bp distal
Rr340291	regulatory region 340291	within coordinates
Six3	sine oculis-related homeobox 3	1786 bp upstream
Six3os1	SIX homeobox 3, opposite strand 1	within coordinates
Tssr146084	transcription start site region 146084	1404 bp upstream
Tssr146085	transcription start site region 146085	1610 bp upstream
Tssr149705	transcription start site region 149705	509 bp downstream
Tssr149706	transcription start site region 149706	1232 bp downstream