rs33416200 SNP Detail

Summary

• ID
  rs33416200
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:122642334 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCCGGTCC CCTCCTGAAA
  GATGTTTGGT GGTTTTTTTT GTTTTGTTTT TCCAGAGCTG AGGACCGAAC CCAGGGCCTT
  GAGCTTGCTA GGCAAGCTCT CTACCACTGA GCTAAATCCC CGAGTCCCCC CCACCCCCCG
  GAAAGATGCT TTATTATCTA AAGCAGCTCC CCTCCCCAGG ATGCCTACTA TCACATTATT
  Y
  AAGGGTCTCT GCTGCCCTAG CACTTTTCTA TGGAAAATAC ACTGTAGATT TTGTTTAGCT
  GCTCGGTGCC TGCCTCCTAG CATCTTGTAA GGGCATCCAG ACTTGAGAAT GAAGCTTGTC
  TGTCTGGTCC ATACTCAGTA CAAAGCACAG TCCCCAACAT CTGCTCATCA TTTATTGAGT
  GCCTACAGTT TAAATGCATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45776591	mCV23330783	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss149187564	ENSMUSSNP5568545	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
ss321668952	CHEV_5_122954280	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33416200					SNP	T	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:122642334 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16553	CpG island 16553	1213 bp distal
Gm57291	predicted gene, 57291	669 bp downstream
Rr378565	regulatory region 378565	52 bp downstream
Rr399329	regulatory region 399329	518 bp downstream
Tssr48701	transcription start site region 48701	1789 bp downstream
Tssr53134	transcription start site region 53134	1993 bp upstream
Tssr53135	transcription start site region 53135	1977 bp upstream
Tssr53136	transcription start site region 53136	1617 bp upstream
Tssr53137	transcription start site region 53137	1529 bp upstream