rs33416889 SNP Detail

Summary

• ID
  rs33416889
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24657796 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAGC CCACCTTAGC TGCCCTAATG
  S
  TTTCTCTGAT TTTCCCAACT CTAGG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39533091	mCV25112355	ABI	CRAMUS_MOUSE	f	SNP	G	G	C	G
ss145355224	ENSMUSSNP5888105	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss325331692	CHEV_17_24575767	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33416889					SNP	G	G	C	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24657796 () rs orientation: forward

Symbol	Name	Function Class
Dnase1l2	deoxyribonuclease 1-like 2	1258 bp downstream
Eci1	enoyl-Coenzyme A delta isomerase 1	within coordinates
Rr329767	regulatory region 329767	996 bp distal
Rr329768	regulatory region 329768	605 bp proximal
Rr337043	regulatory region 337043	580 bp proximal
Rr340709	regulatory region 340709	1212 bp distal
Rr340710	regulatory region 340710	1405 bp proximal
Tssr146730	transcription start site region 146730	1573 bp downstream