rs33417079 SNP Detail

Summary

• ID
  rs33417079
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:124134413 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             GAGGCCCCAG AGGAAGAGGA GCCTGAGAAC CTAATTGAAA TCAGCAGTGC
  R
  CCCCCTGCTG GGGAGCCAGT GGTGAGGTCC CCATGTCCCA CTGTCCCACT           
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45776306	mCV23284260	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A
ss149200719	ENSMUSSNP872416	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		A
ss321672180	CHEV_5_124446359	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33417079					SNP	G	G	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:124134413 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16597	CpG island 16597	1347 bp proximal
Hip1r	huntingtin interacting protein 1 related	within coordinates
Mir7032	microRNA 7032	502 bp upstream
Rr620317	regulatory region 620317	within coordinates
Tssr48830	transcription start site region 48830	1012 bp upstream