rs33417279 SNP Detail

Summary

• ID
  rs33417279
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:145069840 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGG CCAGGTCTTT GGGGGGAGGG
  S
  GGGAATGCCA AGCCACCGAC AGCCC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45776991	mCV25297266	ABI	CRAMUS_MOUSE	f	SNP	C	C	G	G	G
ss144624865	ENSMUSSNP2989168	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G		G
ss321712394	CHEV_5_145893899	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33417279					SNP	C	C	G	G	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:145069840 () rs orientation: forward

Symbol	Name	Function Class
Pdap1	PDGFA associated protein 1	within coordinates
Rr624550	regulatory region 624550	391 bp proximal
Rr624551	regulatory region 624551	429 bp proximal
Tssr49741	transcription start site region 49741	1550 bp downstream
Tssr54419	transcription start site region 54419	142 bp upstream
Tssr54420	transcription start site region 54420	61 bp upstream