rs33417740 SNP Detail

Summary

• ID
  rs33417740
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:70352738 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCAT ATTTTACATA CCAAAGCAGC
  R
  TGACCTGGCC TCCAGGTTCT CCCAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J
ss46273716	mCV22895294	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J
rs33417740					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:70352738 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20428	CpG island 20428	1307 bp proximal
Ndufa13	NADH:ubiquinone oxidoreductase subunit A13	Intron
Rr400887	regulatory region 400887	1443 bp upstream
Rr664594	regulatory region 664594	832 bp distal
Rr664595	regulatory region 664595	1606 bp proximal
Tssr2594	transcription start site region 2594	1680 bp upstream
Tssr81543	transcription start site region 81543	1046 bp downstream
Tssr81544	transcription start site region 81544	1544 bp downstream
Tssr81545	transcription start site region 81545	1573 bp downstream
Tssr81546	transcription start site region 81546	1897 bp downstream
Tssr81547	transcription start site region 81547	1927 bp downstream