rs33418387 SNP Detail

Summary

• ID
  rs33418387
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47867063 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATAC AAAACAAACA AACAAACAAA
  Y
  AAATAAATAA ATAAATAAAT AAATA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss39533923	mCV25219362	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss145707987	ENSMUSSNP3538276	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss325406348	CHEV_17_47693087	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs33418387					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47867063 () rs orientation: forward

Symbol	Name	Function Class
Ccnd3	cyclin D3	within coordinates
Rr335189	regulatory region 335189	1863 bp distal
Rr335190	regulatory region 335190	1263 bp distal
Rr335191	regulatory region 335191	663 bp distal
Rr335192	regulatory region 335192	63 bp distal
Rr335193	regulatory region 335193	138 bp proximal
Tssr144956	transcription start site region 144956	1381 bp upstream
Tssr144957	transcription start site region 144957	1466 bp upstream
Tssr144958	transcription start site region 144958	1562 bp upstream
Tssr144959	transcription start site region 144959	1579 bp upstream
Tssr144960	transcription start site region 144960	1649 bp upstream
Tssr144961	transcription start site region 144961	1690 bp upstream
Tssr144962	transcription start site region 144962	1708 bp upstream
Tssr144963	transcription start site region 144963	1769 bp upstream