rs33419602 SNP Detail

Summary

• ID
  rs33419602
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164792098 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCCCATGT CACTTTCCCT
  TCACCTTCGA GGGACGCTCC TATTCGGCCT GCACCACAGA CGGCCGCAAC GACGGCACGC
  CTTGGTGTAG CACAACAGCT GACTACGATA AGGACGGCAA ATTTGGTTTC TGCCCTAGTG
  AGAGTGAGTA TGCGCTGGGG GTGGGGAGCG GGGCGCCGCC TTGAAGGTTC CAGAATCTTC
  K
  TTCCCAGTCT CTCTTTGCCA TCAGTGGTGT GGCTACTCGC CCTCTCCCTG GGTCTGGTCC
  CCTCTGTGAA ATGAGACGCA TGCTGGGGCC GGGCTTGGCG GTAATACCGT GGGTCTCCTC
  AGGACTCTAC ACGGAGCACG GCAACGGAGA AGGCAAACCC TGTGTGTTCC CGTTCATCTT
  TGAGGGCCGC TCCTACTCTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45277011	mCV23740793	ABI	CRAMUS_MOUSE	f	SNP	G	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs33419602					SNP	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164792098 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12679	CpG island 12679	within coordinates
Cpgi12680	CpG island 12680	607 bp proximal
D2Mit1000	DNA segment, Chr 2, Massachusetts Institute of Technology 1000	1980 bp distal
Mmp9	matrix metallopeptidase 9	Intron
Rr569776	regulatory region 569776	1761 bp proximal
Tssr21690	transcription start site region 21690	1933 bp downstream
Tssr21691	transcription start site region 21691	972 bp upstream
Tssr21692	transcription start site region 21692	1032 bp upstream