rs33420473 SNP Detail

Summary

• ID
  rs33420473
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:68891356 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CTCCCTGGAA GCACTGTGCC TCAGGCCCAA GGCCACTCCT TGCAGCCTGG CTCTCACAAT
  GCCCTTGTCA TCTCCCAGGG ACAGTCCTTG TTCTGTTTGT CCCTCACCTG ATGGTTTCTC
  CTAACCAACA CCTCTGCCTC TTTACAGTCA CCCTTCCCCT TATATTTGTC CCTGAGAAGC
  TAGGAGTAGG ATATTCACCA GCCTGAACTC CAGACTGCAT GGAACTGGCT CTAGCCCATT
  GTCACAATGT GACTTTGGAG AACTTGATGT CTAGGTGCCT CAGCTCCCAT CTAAAAAAAA
  R
  AAAAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGCTC TGAATATTGT TTTATGGAGC
  TGCCATCAGG AAGACATCAC AGCTTCGGAG CTTCTGCACA TGAAAATTAG TAGTCAAATT
  AGAAGGTACT TAGGCGTTTG CTAGGTATTC ATTGCAAATG TGGGGTTTAG AAAGAGGAAA
  TATGCATACT TTCTACGCCA GCTTTGAGGA AATGCCACAG CTAGAATTCA GGTGTAGGAG
  CAGGTACTGG GATGGCTGAA GGAAGAGGAA CAAGAAGAAG ATATGGTTGC TAACTATAAG
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45276532	mCV25079742	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33420473					SNP	G	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:68891356 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cers6	ceramide synthase 6			Intron
				Noncoding-Transcript-Variant
Rr558369	regulatory region 558369			379 bp proximal
Rr558370	regulatory region 558370			498 bp proximal
Rr558371	regulatory region 558371			825 bp proximal