rs33421421 SNP Detail

Summary

• ID
  rs33421421
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119728732 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTCTGTTG AATTTTCAAG
  TACGTCTTTG AGTCGAGTGT AAGGTGCGCA AGGGCATTAG CCTTCTCTTT CGTTCCCCAA
  GAATGTCTCT TTTTCTCTGG CAAAAGGATG GTAGCAGGCA TGGGTGAAGA GTGCCTGAAG
  AGTGGCTTGA TTAGTAGAAC GGGAAAAATC TCCGTCTGAG GGAGACCCAC TCTTGTTCGC
  R
  TCGCCGAAGC CGACACGTGG ATCTTGAGAA GTTAGGGCTC ACTTATGCTC AGTCTGTGGG
  TGTTGTTGAG CTTGCCAAGC TTGCGTGTCC AAGTGCTTGG TCAACTCTGC CTGTCTTGCT
  GGCTTTTTGC GCACGACGCT GCTGCAGTTA AGGTGCAGGA GAGTAGCGAG AGGACTGCTG
  GGAAATGGGC TGGCGGGGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45276837	mCV24941004	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G	G
ss147345367	ENSMUSSNP1882515	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33421421					SNP	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119728732 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930485G23Rik	RIKEN cDNA 4930485G23 gene			within coordinates
Cpgi12132	CpG island 12132			402 bp distal
Cpgi12133	CpG island 12133			within coordinates
Gm75581	predicted gene, 75581			within coordinates
Gm75585	predicted gene, 75585			1094 bp upstream
Mga	MAX gene associated			Intron
				Noncoding-Transcript-Variant
Rr563600	regulatory region 563600			1105 bp distal
Rr563601	regulatory region 563601			1013 bp distal
Rr563602	regulatory region 563602			within coordinates
Rr563603	regulatory region 563603			1984 bp proximal
Tssr19669	transcription start site region 19669			959 bp downstream
Tssr19670	transcription start site region 19670			660 bp downstream
Tssr25831	transcription start site region 25831			1094 bp upstream
Tssr25832	transcription start site region 25832			88 bp downstream