rs33422580 SNP Detail

Summary

• ID
  rs33422580
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57312969 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCATT ATATTGGTTA GCTAAATAAC
  R
  TTTTATGGCT TTGGAGGTGG TGGGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39534547	mCV23457641	ABI	CRAMUS_MOUSE	f	SNP		G	A					A	A
ss62804051	NES17359584	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A		A	G	A	A	G	A	A	A
ss145809272	ENSMUSSNP959971	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33422580					SNP	G	G	A	A	A	A	A	A	A	G	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62804051	NES17359584	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57312969 () rs orientation: forward

Symbol	Name	Function Class
Gtf2f1	general transcription factor IIF, polypeptide 1	within coordinates
Rr529238	regulatory region 529238	1156 bp proximal
Rr529239	regulatory region 529239	1328 bp proximal
Tssr148848	transcription start site region 148848	1536 bp upstream
Tssr148849	transcription start site region 148849	1256 bp upstream
Tssr148850	transcription start site region 148850	1141 bp upstream
Tssr148851	transcription start site region 148851	1077 bp upstream
Tssr148852	transcription start site region 148852	500 bp upstream
Tssr148853	transcription start site region 148853	1094 bp downstream