rs33423178 SNP Detail

Summary

• ID
  rs33423178
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:92111070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTT TCCCTGCGCC CCCTTTAGAA
  R
  ATATTGTGCT GTCACCCACC CAGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45777424	mCV23366175	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss148827570	ENSMUSSNP4884190	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
ss321611417	CHEV_5_92392237	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs33423178					SNP	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:92111070 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16049	CpG island 16049	within coordinates
Rchy1	ring finger and CHY zinc finger domain containing 1	143 bp upstream
Rr125457	regulatory region 125457	within coordinates
Rr367874	regulatory region 367874	within coordinates
Thap6	THAP domain containing 6	122 bp upstream
Tssr47269	transcription start site region 47269	783 bp downstream
Tssr47270	transcription start site region 47270	766 bp downstream
Tssr47271	transcription start site region 47271	738 bp downstream
Tssr47272	transcription start site region 47272	301 bp downstream
Tssr47273	transcription start site region 47273	269 bp downstream
Tssr47274	transcription start site region 47274	253 bp downstream
Tssr47275	transcription start site region 47275	106 bp upstream
Tssr47276	transcription start site region 47276	136 bp upstream
Tssr51828	transcription start site region 51828	1749 bp upstream
Tssr51829	transcription start site region 51829	1599 bp upstream
Tssr51830	transcription start site region 51830	918 bp upstream
Tssr51831	transcription start site region 51831	887 bp upstream
Tssr51832	transcription start site region 51832	471 bp upstream
Tssr51833	transcription start site region 51833	324 bp upstream
Tssr51834	transcription start site region 51834	106 bp upstream
Tssr51835	transcription start site region 51835	74 bp upstream