rs33423987 SNP Detail

Summary

• ID
  rs33423987
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26197385 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAAA AGCAATTATT CCACCCAAGC
  M
  ACTTGGCCAA GGACACGGGA ACCAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39533987	mCV23810069	ABI	CRAMUS_MOUSE	f	SNP		C	C						C
ss60255361	NES15700110	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	A	C	C	A	A		C	C	C	C		C
ss145395990	ENSMUSSNP4089944	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						C
ss325339347	CHEV_17_26115356	CHEVERUD	SCREENING_POP	f	SNP												A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33423987					SNP	C	C	C	C	C	C	A	C	C	A	A	A	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60255361	NES15700110	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26197385 () rs orientation: forward

Symbol	Name	Function Class
Capn15	calpain 15	within coordinates
Rr329923	regulatory region 329923	985 bp distal
Rr329924	regulatory region 329924	216 bp proximal
Rr334464	regulatory region 334464	585 bp distal
Tssr146884	transcription start site region 146884	1476 bp downstream
Tssr146885	transcription start site region 146885	1525 bp downstream